CompSciWeek6

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Reading (shared with Week 7)

  • Beginning Python - skim. chapters 8-14 (use as reference material)
    • see expecially urlopen on p. 300, forks and threads on p. 304
  • Beginning Python - Chapter 15 (Web services)

Class 1: Effective Design

  • Code walk-through, parsing and using graphs
  • Structured Code, Bioinformatics example from AOS Book
  • Code Testing
  • Source Code Versioning
    • basic git

Class 2: Using HPC Resources

  • Accessing binaries and libraries, using modules
  • Using scratch space
  • Submitting a job script
  • Managing queued jobs
  • Advanced scripting tips and tricks
    • awk
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