Difference between revisions of "CompSciWeek5"
From Predictive Chemistry
(Created page with "Reading: * Beginning Python, Chapters 7-8 * [http://www.aosabook.org/en/posa/working-with-big-data-in-bioinformatics.html Bioinformatics Code Design] = Class 1: Effective Design…") |
|||
| Line 1: | Line 1: | ||
Reading: |
Reading: |
||
| − | * Beginning Python, Chapters 7-8 |
+ | * Beginning Python, Chapters 7-8 and 16 (on Testing) |
* [http://www.aosabook.org/en/posa/working-with-big-data-in-bioinformatics.html Bioinformatics Code Design] |
* [http://www.aosabook.org/en/posa/working-with-big-data-in-bioinformatics.html Bioinformatics Code Design] |
||
Revision as of 13:11, 18 September 2014
Reading:
- Beginning Python, Chapters 7-8 and 16 (on Testing)
- Bioinformatics Code Design
Class 1: Effective Design
- Structured Code, Bioinformatics example from AOS Book
- Code Testing
- Source Code Versioning
- basic git
Class 2: Using HPC Resources
- Accessing binaries and libraries, using modules
- Using scratch space
- Submitting a job script
- Managing queued jobs
- Advanced scripting tips and tricks
- awk
